ackfuss-4.4.1/
ackfuss-4.4.1/board/
ackfuss-4.4.1/help/k/
ackfuss-4.4.1/help/n/
ackfuss-4.4.1/help/s/
ackfuss-4.4.1/help/u/
ackfuss-4.4.1/help/v/
ackfuss-4.4.1/help/x/
ackfuss-4.4.1/help/y/
ackfuss-4.4.1/help/z/
ackfuss-4.4.1/src/areaconvert/
ackfuss-4.4.1/src/areaconvert/h/ 
AREASAVE

This will cycle through every area in the game and set the modified bit, forcing it
to save. This can take some time, especially with a lot of areas, so be patient.